This list only shows publications with contributions from AgriGenomics doctoral candidates. Faculty-only publications are not included.

(Highlighted are AgriGenomics doctoral candidates and faculty members) 


Atanasoff-Kardjalieff, A.K., Berger, H., Steinert, K., Janevska, S., Ponts, N., Humpf, H.U., Kalinina, S., Studt-Reinhold, L. (2024) Incorporation of the histone variant H2A.Z counteracts gene silencing mediated by H3K27 trimethylation in Fusarium fujikuroi. Epigenetics Chromatin 17(1), 7. doi: 10.1186/s13072-024-00532-y

Studt-Reinhold, L., Atanasoff-Kardjalieff, A. K., Berger, H., Petersen, C., Bachleitner, S., Sulyok, M., Fischle, A., Humpf, H.U., Kalinina,S., Søndergaard, T. E. (2024) H3K27me3 is vital for fungal development and secondary metabolite gene silencing, and substitutes for the loss of H3K9me3 in the plant pathogen Fusarium proliferatum. PLoS Genet 20(1), e1011075. doi: 10.1371/journal.pgen.1011075


Dallinger HG, Löschenberger F, Azrak N, Ametz C, Michel S, Bürstmayr H (2023) Genome-wide association mapping for pre-harvest sprouting in European winter wheat detects novel resistance QTL, pleiotropic effects, and structural variation in multiple genomes. The Plant Genome n/a:e20301. doi:10.1002/tpg2.20301

Morales L, Ametz C, Dallinger HG, Loschenberger F, Neumayer A, Zimmerl S, Buerstmayr H (2023) Comparison of linear and semi-parametric models incorporating genomic, pedigree, and associated loci information for the prediction of resistance to stripe rust in an Austrian winter wheat breeding program. Theoretical and Applied Genetics 136. doi:10.1007/s00122-023-04249-6


Atanasoff-Kardjalieff AK, Seidl B, Steinert K, Daniliuc CG, Schuhmacher R, Humpf HU, Kalinina S, Studt-Reinhold L (2022) Biosynthesis of the Isocoumarin Derivatives Fusamarins is Mediated by the PKS8 Gene Cluster in Fusarium. Chembiochem:e202200342. doi:10.1002/cbic.202200342

Atanasoff-Kardjalieff AK, Studt L (2022) Secondary Metabolite Gene Regulation in Mycotoxigenic Fusarium Species: A Focus on Chromatin. Toxins 14. doi:10.3390/toxins14020096

Ehn M, Michel S, Morales L, Gordon T, Dallinger HG, Buerstmayr H (2022) Genome-wide association mapping identifies common bunt (Tilletia caries) resistance loci in bread wheat (Triticum aestivum) accessions of the USDA National Small Grains Collection. Theoretical and Applied Genetics 135:3103-3115. doi:10.1007/s00122-022-04171-3

Feraru E, Feraru MI, Moulinier-Anzola J, Schwihla M, Santos JFD, Sun L, Waidmann S, Korbei B, Kleine-Vehn J (2022) PILS proteins provide a homeostatic feedback on auxin signaling output. Development 149. doi:10.1242/dev.200929

Konstantinova N, Hormayer L, Glanc M, Keshkeih R, Tan ST, Di Donato M, Retzer K, Moulinier-Anzola J, Schwihla M, Korbei B, Geisler M, Friml J, Luschnig C (2022) WAVY GROWTH Arabidopsis E3 ubiquitin ligases affect apical PIN sorting decisions. Nature Communications 13. doi:10.1038/s41467-022-32888-8

Michel S, Loschenberger F, Moreno-Amores J, Ametz C, Sparry E, Abel E, Ehn M, Burstmayr H (2022) Balancing selection gain and genetic diversity in the genomic planning of crosses. Plant Breeding 141:184-193. doi:10.1111/pbr.13003

Naji MM, Jiang YF, Utsunomiya YT, Rosen BD, Solkner J, Wang CD, Jiang L, Zhang Q, Zhang Y, Ding XD, Meszaros G (2022) Favored single nucleotide variants identified using whole genome Re-sequencing of Austrian and Chinese cattle breeds. Frontiers in Genetics 13. doi:10.3389/fgene.2022.974787

Retzer K, Moulinier-Anzola J, Lugsteiner R, Konstantinova N, Schwihla M, Korbei B, Luschnig C (2022) Endosomally Localized RGLG-Type E3 RING-Finger Ligases Modulate Sorting of Ubiquitylation-Mimic PIN2. International Journal of Molecular Sciences 23. doi:10.3390/ijms23126767

Rienesl L, Khayatzdadeh N, Kock A, Egger-Danner C, Gengler N, Grelet C, Dale LM, Werner A, Auer FJ, Leblois J, Solkner J (2022) Prediction of Acute and Chronic Mastitis in Dairy Cows Based on Somatic Cell Score and Mid-Infrared Spectroscopy of Milk. Animals 12. doi:10.3390/ani12141830

Rienesl L, Marginter M, Stuckler P, Kock A, Egger-Danner C, Solkner J (2022) Use of differential somatic cell count, somatic cell score, and milk mid-infrared spectral analysis for monitoring mastitis in dairy cows during routine milk recording. Livestock Science 264. doi:10.1016/j.livsci.2022.105050

Wascher FL, Stralis-Pavese N, McGrath JM, Schulz B, Himmelbauer H, Dohm JC (2022) Genomic distances reveal relationships of wild and cultivated beets. Nature Communications 13. doi:10.1038/s41467-022-29676-9


Atanasoff-Kardjalieff AK, Lünne F, Kalinina S, Strauss J, Humpf H-U, Studt L (2021) Biosynthesis of Fusapyrone Depends on the H3K9 Methyltransferase, FmKmt1, in Fusarium mangiferae. Frontiers in Fungal Biology 2. doi:10.3389/ffunb.2021.671796

Ceranic A, Svoboda T, Berthiller F, Sulyok M, Samson JM, Guldener U, Schuhmacher R, Adam G (2021) Identification and Functional Characterization of the Gene Cluster Responsible for Fusaproliferin Biosynthesis in Fusarium proliferatum. Toxins 13. doi:10.3390/toxins13070468

Lehner R, Blazek L, Minoche AE, Dohm JC, Himmelbauer H (2021) Assembly and characterization of the genome of chard (Beta vulgaris ssp. vulgaris var. cicla). Journal of Biotechnology 333:67-76. doi:10.1016/j.jbiotec.2021.04.007

Morales L, Michel S, Ametz C, Dallinger HG, Loschenberger F, Neumayer A, Zimmerl S, Buerstmayr H (2021) Genomic signatures of selection for resistance to stripe rust in Austrian winter wheat. Theoretical and Applied Genetics 134:3111-3121. doi:10.1007/s00122-021-03882-3

Naji MM, Utsunomiya YT, Solkner J, Rosen BD, Meszaros G (2021) Assessing Bos taurus introgression in the UOA Bos indicus assembly. Genetics Selection Evolution 53. doi:10.1186/s12711-021-00688-1

Naji MM, Utsunomiya YT, Solkner J, Rosen BD, Meszaros G (2021) Investigation of ancestral alleles in the Bovinae subfamily. Bmc Genomics 22. doi:10.1186/s12864-021-07412-9

Schwihla M, Luschnig C, Korbei B (2021) Modulation of the endosomal pathway for optimized response to drought stress: from model to crop plants. Die Bodenkultur: Journal of Land Management, Food and Environment 72:57-72. doi:doi:10.2478/boku-2021-0006


Chen ZH, Zehraoui E, Atanasoff-Kardjalieff AK, Strauss J, Studt L, Ponts N (2020) Effect ofH2A.Zdeletion is rescued by compensatory mutations inFusarium graminearum. Plos Genetics 16. doi:10.1371/journal.pgen.1009125

Moreno-Ruiz D, Fuchs A, Missbach K, Schuhmacher R, Zeilinger S (2020) Influence of Different Light Regimes on the Mycoparasitic Activity and 6-Pentyl-alpha-pyrone Biosynthesis in Two Strains of Trichoderma atroviride. Pathogens 9. doi:10.3390/pathogens9100860

Moulinier-Anzola J, Schwihla M, De-Araujo L, Artner C, Jorg L, Konstantinova N, Luschnig C, Korbei B (2020) TOLs Function as Ubiquitin Receptors in the Early Steps of the ESCRT Pathway in Higher Plants. Molecular Plant 13:717-731. doi:10.1016/j.molp.2020.02.012

Schwihla M, Korbei B (2020) The Beginning of the End: Initial Steps in the Degradation of Plasma Membrane Proteins. Frontiers in Plant Science 11. doi:10.3389/fpls.2020.00680


Steiner B, Buerstmayr M, Wagner C, Danler A, Eshonkulov B, Ehn M, Buerstmayr H (2019) Fine-mapping of the Fusarium head blight resistance QTL Qfhs.ifa-5A identifies two resistance QTL associated with anther extrusion. Theoretical and Applied Genetics 132:2039-2053. doi:10.1007/s00122-019-03336-x