Proteomics/glycomics

Hykollari A, Malzl D, Jin C, Eschenbach C, Kianičková K, Wilson IBH, Paschinger K.
New insights into the N-glycomes of Dictyostelium species. (Link)
BBA Adv. 2025 Jan 16;7:100142.

Schoberer J, Vavra U, Shin YJ, Grünwald-Gruber C, Strasser R. 
Elucidation of the late steps in the glycan-dependent ERAD of soluble misfolded glycoproteins. (Link)
Plant J. 2025 Jan;121(1):e17185. 

Helm J, Mereiter S, Oliveira T, Gattinger A, Markovitz DM, Penninger JM, Altmann F, Stadlmann J.  
Non-targeted N-glycome profiling reveals multiple layers of organ-specific diversity in mice. (Link)
Nat Commun. 2024 Nov 9;15(1):9725.

Gabler T, Dali A, Bellei M, Sebastiani F, Becucci M, Battistuzzi G, Furtmüller PG, Smulevich G, Hofbauer S. 
Revisiting catalytic His and Glu residues in coproporphyrin ferrochelatase - unexpected activities of active site variants. (Link)
FEBS J. 2024 May;291(10):2260-2272. 

Helm J, Grünwald-Gruber C, Urteil J, Pabst M, Altmann F. 
Simple Routes to Stable Isotope-Coded Native Glycans. (Link)
Anal Chem. 2024 Jan 9;96(1):163-169. 

Ruocco V, Vavra U, König-Beihammer J, Bolaños Martínez OC, Kallolimath S, Maresch D, Grünwald-Gruber C, Strasser R. 
Impact of mutations on the plant-based production of recombinant SARS-CoV-2 RBDs. (Link)
Front Plant Sci. 2023 Oct 6;14:1275228. 

Kogelmann B, Palt R, Maresch D, Strasser R, Altmann F, Kallolimath S, Sun L, D'Aoust MA, Lavoie PO, Saxena P, Gach JS, Steinkellner H.
In planta expression of active bacterial GDP-6-deoxy-d-lyxo-4-hexulose reductase for glycan modulation. (Link)
Plant Biotechnol J. 2023 Oct;21(10):1929-1931.

Wilson I, Yan S, Jin C, Dutkiewicz Z, Rendić D, Palmberger D, Schnabel R, Paschinger K.
Increasing Complexity of the N-Glycome During Caenorhabditis Development. (Link)
Mol Cell Proteomics. 2023 Mar;22(3):100505.

Uetz P, Melink S, Grünwald-Gruber C, Strasser R, Stoger E.
CRISPR/Cas9-mediated knockout of a prolyl-4-hydroxylase subfamily in Nicotiana benthamiana using DsRed2 for plant selection. (Link)
Biotechnol J. 2022 Jul;17(7):e2100698.

Valli M, Grillitsch K, Grünwald-Gruber C, Tatto NE, Hrobath B, Klug L, Ivashov V, Hauzmayer S, Koller M, Tir N, Leisch F, Gasser B, Graf AB, Altmann F, Daum G, Mattanovich D.
A subcellular proteome atlas of the yeast Komagataella phaffii. (Link)
FEMS Yeast Res. 2020 Feb 1;20(1):foaa001.

Bydlinski N, Maresch D, Schmieder V, Klanert G, Strasser R, Borth N.
The contributions of individual galactosyltransferases to protein specific N-glycan processing in Chinese Hamster Ovary cells. (Link)
J Biotechnol. 2018 Sep 20;282:101-110.

Montero-Morales L, Maresch D, Castilho A, Turupcu A, Ilieva KM, Crescioli S, Karagiannis SN, Lupinek C, Oostenbrink C, Altmann F, Steinkellner H.
Recombinant plant-derived human IgE glycoproteomics. (Link)
J Proteomics. 2017 May 24;161:81-87.

Bönisch M, Sellmann C, Maresch D, Halbig C, Becker S, Toleikis L, Hock B, Rüker F.
Novel CH1:CL interfaces that enhance correct light chain pairing in heterodimeric bispecific antibodies. (Link)
Protein Eng Des Sel. 2017 Sep 1;30(9):685-696.

Grünwald-Gruber C, Thader A, Maresch D, Dalik T, Altmann F.
Determination of true ratios of different N-glycan structures in electrospray ionization mass spectrometry. (Link)
Anal Bioanal Chem. 2017 Apr;409(10):2519-2530.

Gacek-Matthews A, Berger H, Sasaki T, Wittstein K, Gruber C, Lewis ZA, Strauss J.
KdmB, a Jumonji Histone H3 Demethylase, Regulates Genome-Wide H3K4Trimethylation and Is Required for Normal Induction of Secondary Metabolism in Aspergillus nidulans. (Link)
PLoS Genet. 2016 Aug 22;12(8):e1006222.

Leymarie N, Griffin PJ, Jonscher K, Kolarich D, Orlando R, McComb M, Zaia J,Aguilan J, Alley WR, Altmann F, Ball LE, Basumallick L, Bazemore-Walker CR, Behnken H, Blank MA, Brown KJ, Bunz SC, Cairo CW, Cipollo JF, Daneshfar R, Desaire H, Drake RR, Go EP, Goldman R, Gruber C, Halim A, Hathout Y, Hensbergen PJ, Horn DM, Hurum D, Jabs W, Larson G, Ly M, Mann BF, Marx K, Mechref Y, Meyer B, Möginger U, Neusüβ C, Nilsson J, Novotny MV, Nyalwidhe JO, Packer NH, Pompach P, Reiz B, Resemann A, Rohrer JS, Ruthenbeck A, Sanda M, Schulz JM, Schweiger-Hufnagel U, Sihlbom C, Song E, Staples GO, Suckau D, Tang H, Thaysen-Andersen M, Viner RI, An Y, Valmu L, Wada Y, Watson M, Windwarder M, Whittal R, Wuhrer M, Zhu Y, Zou C.
Interlaboratory study on differential analysis of protein glycosylation by mass spectrometry: the ABRF glycoprotein research multi-institutional study 2012. (Link)
Mol Cell Proteomics. 2013 Oct;12(10):2935-51.

Small molecules

Bolaños-Martínez OC, Urbanetz A, Maresch D, Strasser R, Vimolmangkang S. 
Engineering Nicotiana benthamiana for production of active cannabinoid synthases via secretory pathway optimization. (Link)
Biotechnol Rep (Amst). 2024 Nov 27;45:e00865.

Bennett AA, Steininger-Mairinger T, Eroğlu ÇG, Gfeller A, Wirth J, Puschenreiter M, Hann S.
Dual column chromatography combined with high-resolution mass spectrometry improves coverage of non-targeted analysis of plant root exudates. (Link)
Anal Chim Acta. 2024 Oct 23;1327:343126. 

Eroğlu ÇG, Bennett AA, Steininger-Mairinger T, Hann S, Puschenreiter M, Wirth J, Gfeller A. 
Neighbour-induced changes in root exudation patterns of buckwheat results in altered root architecture of redroot pigweed. (Link)
Sci Rep. 2024 Apr 15;14(1):8679. 

Spiridon A, Oburger E, Valadbeigi Y, Kloimböck T, Stanetty C, Kratena N, Draskovits M, Causon T, Hann S.
Surveying the mugineic acid family: Ion mobility - quadrupole time-of-flight mass spectrometry (IM-QTOFMS) characterization and tandem mass spectrometry (LC-ESI-MS/MS) quantification of all eight naturally occurring phytosiderophores. (Link)
Anal Chim Acta. 2023 Oct 16;1278:341718. 

Moser B, Steininger-Mairinger T, Jandric Z, Zitek A, Scharl T, Hann S, Troyer C. 
Spoilage markers for freshwater fish: A comprehensive workflow for non-targeted analysis of VOCs using DHS-GC-HRMS. (Link)
Food Res Int. 2023 Oct;172:113123. 

Jandric Z, Ribič M, Causon T, Nauer S, Zitek A, Eder R, Hann S.
Metabolic composition of healthy and infected Grüner Veltliner grapes and wine assessed by high resolution mass spectrometry. (Link)
Food Chem. 2023 Oct;2:100219.

Rathgeb A, Causon T, Krachler R, Hann S.
Combining iron affinity-based fractionation with non-targeted LC-ESI-TOFMS for the study of iron-binding molecules in dissolved organic matter. (Link)
Metallomics. 2022 Oct 20;14(10):mfac079. 

Wasito H, Hermann G, Fitz V, Troyer C, Hann S, Koellensperger G. 
Yeast-based reference materials for quantitative metabolomics. (Link)
Anal Bioanal Chem. 2022 Jun;414(15):4359-4368. 

Mairinger T, Weiner M, Hann S, Troyer C. 
Selective and Accurate Quantification of N-Acetylglucosamine in Biotechnological Cell Samples via GC-MS/MS and GC-TOFMS. (Link)
Anal Chem. 2020 Apr 7;92(7):4875-4883.

Gassler T, Sauer M, Gasser B, Egermeier M, Troyer C, Causon T, Hann S, Mattanovich D, Steiger MG.
The industrial yeast Pichia pastoris is converted from a heterotroph into an autotroph capable of growth on CO. (Link)
Nat Biotechnol. 2020 Feb;38(2):210-216. 

Causon TJ, Ivanova-Petropulos V, Petrusheva D, Bogeva E, Hann S. 
Fingerprinting of traditionally produced red wines using liquid chromatography combined with drift tube ion mobility-mass spectrometry. (Link)
Anal Chim Acta. 2019 Apr 4;1052:179-189. 

Rathgeb A, Causon T, Krachler R, Hann S.
From the peat bog to the estuarine mixing zone: Common features and variances in riverine dissolved organic matter determined by non-targeted analysis. (Link)
Mar Chem. 2017 Aug;194:158-167.

Mairinger T, Steiger M, Nocon J, Mattanovich D, Koellensperger G, Hann S.
Gas Chromatography-Quadrupole Time-of-Flight Mass Spectrometry-Based Determination of Isotopologue and Tandem Mass Isotopomer Fractions of Primary Metabolites for C-13-Metabolic Flux Analysis. (Link)
Anal Chem. 2015;87(23):11792-11802.

Elemental and isotope ratio analysis

Schaier M, Hermann G, Koellensperger G, Theiner S.
Accurate characterization of β-amyloid (Aβ40, Aβ42) standards using species-specific isotope dilution by means of HPLC-ICP-MS/MS. (Link)
Anal Bioanal Chem. 2022 Jan;414(1):639-648.

Rottensteiner H, Kaufmann S, Rathgeb A, Kink B, Plaimauer B, Matthiessen P, Hann S, Scheiflinger F. 
Temperature-dependent irreversible conformational change of recombinant ADAMTS13 upon metal ion chelation. (Link)
J Thromb Haemost. 2019 Jun;17(6):995-1002. 

Tchaikovsky A, Zitek A, Irrgeher J, Opper C, Scheiber R, Moder K, Congiu L, Prohaska T. 
Chemometric tools for determining site-specific elemental and strontium isotopic fingerprints in raw and salted sturgeon caviar. (Link) 
Eur Food Res Technol. 2019;245(11):2515-28.

Theiner S, Schoeberl A, Fischer L, Neumayer S, Hann S, Koellensperger G. 
FI-ICP-TOFMS for quantification of biologically essential trace elements in cerebrospinal fluid - high-throughput at low sample volume. (Link)
Analyst. 2019 Jul 22;144(15):4653-4660. 

Mairinger T, Wozniak-Knopp G, Ruker F, Koellensperger G, Hann S.
Element labeling of antibody fragments for ICP-MS based immunoassays. (Link) 
J. Anal. At. Spectrom. 2016 Oct;31(11):2330-2337.

Schindlegger Y, Oburger E, Puschenreiter M, Stingeder G, Koellensperger G, Hann S.
Speciation of 2 '-deoxymugineic acid-metal complexes in top soil extracts by multi-modal stationary phase LC-ICP-MS. (Link) 
J. Anal. At. Spectrom. 2015 Mar;30(6):1345-1355.

Fischer L, Zipfel B, Koellensperger G, Kovac J, Bilz S, Kunkel A, Venzago C, Hann S.
Flow injection combined with ICP-MS for accurate high throughput analysis of elemental impurities in pharmaceutical products according to USP 232/233. (Link)
J Pharm Biomed Anal. 2014 Jul;95:121-129.