• Picture of Scanning Electron Microscope FEI Apreo VolumeScope

About the instrument

The FEI Apreo VolumeScope is a high-resolution field emission scanning electron microscope designed for advanced 2D and 3D imaging of biological, soft-matter, and materials-science samples.

A central capability of the instrument is serial block-face scanning electron microscopy (SBF-SEM). For SBF-SEM, resin-embedded samples are mounted inside the SEM and repeatedly imaged and sectioned using an integrated ultramicrotome. This automated image-and-cut workflow generates serial image stacks that can be used for 3D reconstruction of cells, tissues, plant material, microorganisms, biomaterials, and other structured specimens.

The Apreo VolumeScope can be used for room-temperature SEM imaging of prepared samples such as resin blocks, polished surfaces, coated specimens, fractured samples, and serial sections. It is particularly useful for biological ultrastructure, plant tissue analysis, cell and tissue morphology, biofilms, biomaterials, and nanobiotechnology applications.

The system also supports cryo-SEM workflows. In combination with our Leica cryo-preparation equipment, samples can be high-pressure frozen, freeze-fractured, coated, transferred under vacuum, and imaged under cryogenic conditions. This enables the analysis of frozen samples in a state closer to their native conformation and is especially valuable for hydrated, delicate, or soft biological specimens such as bacterial and mammalian cell cultures, plant material, biofilms, gels, and other sensitive samples.

In addition to block-face and cryo imaging, the instrument can be used to image array tomography samples, where serial sections are collected onto a suitable substrate and imaged in the SEM. This approach can complement SBF-SEM when physical serial sections need to be preserved, re-imaged, or combined with other imaging modalities.

The microscope is equipped with an EDS detector for energy-dispersive X-ray spectroscopy (EDS/EDX). EDS enables elemental analysis and mapping, providing compositional information in addition to structural SEM imaging. This can be useful for locating mineral deposits, metals, nanoparticles, stains, contrast agents, particles, or other inorganic components in biological and hybrid samples.

Image data from SEM, SBF-SEM, and array tomography workflows can be further processed and visualized using image analysis software such as Amira, which is available on the support workstation. Depending on the sample and acquisition strategy, this can support segmentation, 3D visualization, and quantitative analysis of volume datasets.

Technical details

  • Instrument: FEI Apreo VolumeScope / Thermo Scientific VolumeScope field emission scanning electron microscope
  • Installed: 2018
  • Imaging modes: high-resolution SEM imaging at room temperature and under cryogenic conditions
  • Volume imaging: integrated ultramicrotome for serial block-face SEM (SBF-SEM)
  • SBF-SEM workflow: repeated automated imaging and sectioning of resin-embedded blocks for generation of aligned 3D image stacks
  • Sample types: resin-embedded biological samples, plastic-embedded plant material, cells and tissues, microorganisms, biomaterials, coated samples, fractured samples, and selected materials-science samples
  • Cryo capability: cryo-SEM imaging using Leica cryo-preparation and transfer equipment
  • Cryo-preparation workflow: compatible with Leica HPM100 high-pressure freezing, Leica EM ACE900 freeze-fracture/coating, Leica EM VCT500 vacuum cryo-transfer, and Leica EM VCM cryo-stage/module workflows
  • Cryo applications: imaging of frozen-hydrated or cryo-preserved specimens, freeze-fractured samples, bacterial and mammalian cell cultures, soft matter, biofilms, and other sensitive hydrated samples
  • Array tomography: SEM imaging of serial sections mounted on suitable substrates; acquisition workflow may depend on sample format and project requirements
  • EDS detector: AMETEK / EDAX Octane Elect Plus EDS system
  • Elemental analysis: EDS point analysis, spectra, and elemental mapping for compositional characterization
  • Vacuum modes: high-vacuum operation and low-vacuum capability for suitable samples
  • Data analysis: image processing, segmentation, 3D visualization, and volume rendering possible using Amira software on the support workstation

Typical Applications

  • High-resolution SEM imaging of biological and soft-matter samples
  • 3D ultrastructural analysis by serial block-face SEM
  • Volume imaging of resin-embedded cells, tissues, plant samples, and microorganisms
  • Cryo-SEM imaging of frozen samples in near-native conformation
  • Freeze-fracture SEM of bacterial cultures, mammalian cells, plant material, and hydrated specimens
  • SEM imaging of array tomography sections
  • Elemental analysis and mapping using EDS/EDX
  • Analysis of nanoparticles, mineral deposits, metals, stains, contrast agents, and inorganic components in biological or hybrid samples
  • Correlative structural and compositional analysis
  • 3D visualization and segmentation of SEM volume datasets

Notes for Users

The optimal preparation and imaging conditions depend strongly on the sample type and the scientific question. Room-temperature SEM is typically used for fixed, dehydrated, embedded, coated, or polished samples. Cryo-SEM is recommended when preservation of hydrated morphology or near-native structure is important. SBF-SEM requires suitable resin embedding, staining, and block preparation. Please contact the facility early during project planning to discuss the most appropriate preparation, imaging, and analysis workflow.